YaqingLiu

Generate the Panel of Normal files for TNseq and TNscope.

Atjaunināts pirms 3 gadiem

Generating a VAF file from one FASTQ file parallelly. And then parallelized read the set of VAF files by vaf_ncm.py.

Atjaunināts pirms 3 gadiem

Generate a VAF file from the FASTQ file. The purpose of this app is that sometimes we have to process hundreds of files. In this case, using YaqingLiu/NGSCheckMate_parallel is not an optimal choice.

Atjaunināts pirms 3 gadiem

Infer and visualize copy number from high-throughput DNA sequencing data.

Atjaunināts pirms 4 gadiem

The coverage of 2315 genes selected from the Network of Cancer Genes (NCG).

Atjaunināts pirms 4 gadiem

Calculate the MD5 of INPUT files in bulk.

Atjaunināts pirms 4 gadiem

Variant calling using Varscan somatic, processSomatic and somaticFilter based on BAM file.

Atjaunināts pirms 4 gadiem

Calculate the bed coverage of multiple BAM files before and after dedup

Atjaunināts pirms 4 gadiem