WES analysis

Automated integrated analysis software for genomics data of the cancer patients.

Quality control

FastQC, FastQ Screen, Qualimap

Variant calling

• SNV/Indel: TNseq (somatic), Haplotyper (germline)
• CNV: CNVkit
• SV: Manta
• TMB: in-house code
• HRD: sequenza
• MSI: MSIsensor