YaqingLiu
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WesPipe
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Automated integrated analysis software for genomics data of the cancer patients.
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YaqingLiu a8bce51877 docs: README.md 2 years ago
tasks feat: tnscope min_base_qual 2 years ago
.gitignore Initial commit 2 years ago
LICENSE Initial commit 2 years ago
README.md docs: README.md 2 years ago
defaults fix: interval_padding 2 years ago
inputs feat: qc and multi callers 2 years ago
workflow.wdl refactor: varscan 2 years ago

README.md

WES analysis

Automated integrated analysis software for genomics data of the cancer patients.

Quality control

FastQC, FastQ Screen, Qualimap

Variant calling

  • SNV/Indel: TNseq (somatic), Haplotyper (germline)
  • CNV: CNVkit
  • SV: Manta
  • TMB: in-house code
  • HRD: sequenza
  • MSI: MSIsensor