YaqingLiu
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WesPipe
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Automated integrated analysis software for genomics data of the cancer patients.
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YaqingLiu a8bce51877 docs: README.md пре 2 година
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README.md

WES analysis

Automated integrated analysis software for genomics data of the cancer patients.

Quality control

FastQC, FastQ Screen, Qualimap

Variant calling

  • SNV/Indel: TNseq (somatic), Haplotyper (germline)
  • CNV: CNVkit
  • SV: Manta
  • TMB: in-house code
  • HRD: sequenza
  • MSI: MSIsensor