YaqingLiu
/
WesPipe
Volgen 1
Ster 0
Vork 0
Code Kwesties 0 Pull-aanvragen 0 Publicaties 0 Wiki Activiteit
Automated integrated analysis software for genomics data of the cancer patients.
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
41 Commits
1 Branch
Branch: master
Branches Labels
${ item.name }
Maak branch ${ searchTerm }
van 'master'
${ noResults }
YaqingLiu a8bce51877 docs: README.md 2 jaren geleden
tasks feat: tnscope min_base_qual 2 jaren geleden
.gitignore Initial commit 2 jaren geleden
LICENSE Initial commit 2 jaren geleden
README.md docs: README.md 2 jaren geleden
defaults fix: interval_padding 2 jaren geleden
inputs feat: qc and multi callers 2 jaren geleden
workflow.wdl refactor: varscan 2 jaren geleden

README.md

WES analysis

Automated integrated analysis software for genomics data of the cancer patients.

Quality control

FastQC, FastQ Screen, Qualimap

Variant calling

  • SNV/Indel: TNseq (somatic), Haplotyper (germline)
  • CNV: CNVkit
  • SV: Manta
  • TMB: in-house code
  • HRD: sequenza
  • MSI: MSIsensor