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YaqingLiu
a8bce51877
docs: README.md
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README.md
WES analysis
Automated integrated analysis software for genomics data of the cancer patients.
Quality control
FastQC, FastQ Screen, Qualimap
Variant calling
- SNV/Indel: TNseq (somatic), Haplotyper (germline)
- CNV: CNVkit
- SV: Manta
- TMB: in-house code
- HRD: sequenza
- MSI: MSIsensor