@@ -54,7 +54,6 @@ task TNscope { | |||
--algo TNscope \ | |||
$SAMPLE \ | |||
--dbsnp ${dbsnp_dir}/${dbsnp} \ | |||
--min_base_qual 20 \ | |||
${sample}.TNscope.vcf | |||
# awk -F'\t' '{if(($1~"^#")||($1!~"^#" && $7=="PASS")){print $0}}' ${sample}.TNscope.vcf > ${sample}.TNscope.PASS.vcf |