YaqingLiu
/
WesPipe
Segui 1
Vota 0
Forka 0
Codice Problemi 0 Pull Requests 0 Rilasci 0 Wiki Attività
Automated integrated analysis software for genomics data of the cancer patients.
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
41 Commit
1 Ramo (Branch)
Ramo (Branch): master
Rami (Branch) Tag
${ item.name }
Crea branch ${ searchTerm }
da 'master'
${ noResults }
YaqingLiu a8bce51877 docs: README.md 2 anni fa
tasks feat: tnscope min_base_qual 2 anni fa
.gitignore Initial commit 2 anni fa
LICENSE Initial commit 2 anni fa
README.md docs: README.md 2 anni fa
defaults fix: interval_padding 2 anni fa
inputs feat: qc and multi callers 2 anni fa
workflow.wdl refactor: varscan 2 anni fa

README.md

WES analysis

Automated integrated analysis software for genomics data of the cancer patients.

Quality control

FastQC, FastQ Screen, Qualimap

Variant calling

  • SNV/Indel: TNseq (somatic), Haplotyper (germline)
  • CNV: CNVkit
  • SV: Manta
  • TMB: in-house code
  • HRD: sequenza
  • MSI: MSIsensor