89 Commits (b124b6d8d03173c1dd7e61d73ff73db8459a4fb3)

 

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Author	SHA1	Message	Date
YaqingLiu	b124b6d8d0	Fixbug: TNseq	3 years ago
YaqingLiu	dbce0e5ce4	Alter: tumor-only	3 years ago
YaqingLiu	55e4232daa	Fixbug: input_fastq and input_bam	3 years ago
YaqingLiu	831fa1b007	Alter: varscan_vep input name	3 years ago
YaqingLiu	9a3ce1ee23	Alter: VEP task name	3 years ago
YaqingLiu	9e1ac3e469	Alter: BQSR	3 years ago
YaqingLiu	7868563c2a	Fixbug: ANNOVAR	3 years ago
YaqingLiu	33b1c80f3e	test bam input	3 years ago
YaqingLiu	cb2cc7173e	test add bam	3 years ago
YaqingLiu	fa7bbf3d1d	Update: README	4 years ago
YaqingLiu	470d220762	Update: README	4 years ago
YaqingLiu	270b9d1ac0	Update: README	4 years ago
YaqingLiu	3960b57b2b	Update: README	4 years ago
YaqingLiu	01d17edd41	Update: README	4 years ago
YaqingLiu	607454ab2f	Update: add VEP	4 years ago
YaqingLiu	dbd1da94c2	Update: add PASS filter option	4 years ago
YaqingLiu	3a2e5030af	Update ANNOVAR.wdl filename	4 years ago
YaqingLiu	d925a41571	Update: ANNOVAR	4 years ago
YaqingLiu	fef526105b	Add TNseq output	4 years ago
YaqingLiu	440fc0d224	Add annovar parameter	4 years ago
YaqingLiu	ef82cc2a54	Fixbug: output of annovar	4 years ago
YaqingLiu	a2064698dc	Fixbug: output of annovar	4 years ago
YaqingLiu	f3928d598e	Update: default interval_padding is 0	4 years ago
YaqingLiu	6d4d6abe80	Update: simplify BQSR	4 years ago
YaqingLiu	eab87988a1	Alter: Varscan2 input is deduped BAM	4 years ago
YaqingLiu	e8f07a8c53	Alter: TNseq input is deduped BAM	4 years ago
YaqingLiu	d1faa18e02	Alter: TNseq Input	4 years ago
YaqingLiu	03fb6ee728	Update: defaults	4 years ago
YaqingLiu	568b2547c3	Update: defaults	4 years ago
YaqingLiu	7e612b6ddd	Fix bug: merge Varscan's results	4 years ago
YaqingLiu	cb6332a576	Update: varscan somatic annovar	4 years ago
YaqingLiu	a06abfc5cf	Update: varscan	4 years ago
YaqingLiu	96a3c5dc5d	Update: annovar.wdl, remove ensGene and knownGene	4 years ago
YaqingLiu	09955be90c	Update: default sentieon version	4 years ago
YaqingLiu	61c1a9944f	Update: README.md	4 years ago
YaqingLiu	4c099f39b6	Update: README.md	4 years ago
YaqingLiu	d132679ec2	update default	4 years ago
YaqingLiu	4ce53ad6c6	Fix bug: TNscope.wdl	4 years ago
YaqingLiu	af9561b1e0	Fix bug: BQSR.wdl	4 years ago
YaqingLiu	59b2e9cb84	Fix bug: Realigner's inputs	4 years ago
YaqingLiu	ed468bfd8e	Fix bug: TNseq.wdl	4 years ago
YaqingLiu	a6057601d2	Fix bug: BQSR.wdl	4 years ago
YaqingLiu	fe662a3686	Fix bug: TNseq.wdl	4 years ago
YaqingLiu	e1902ce785	Update: default interval_padding	4 years ago
YaqingLiu	09159a19f9	Update: README.md	4 years ago
YaqingLiu	ab4b741af9	Fix bug: germline	4 years ago
YaqingLiu	784f19e2c9	Fix bug: remove vcf2maf	4 years ago
YaqingLiu	02f79915c3	Fix bug: remove vcf2maf	4 years ago
YaqingLiu	693a6bc34b	Fix bug: Haplotyper	4 years ago
YaqingLiu	193d7a3bf4	Update: inputs	4 years ago