@@ -381,15 +381,6 @@ workflow {{ project_name }} { | |||
cluster_config=cluster_config, | |||
disk_size=disk_size | |||
} | |||
call vcf2maf.vcf2maf as snp_somatic_vcf2maf { | |||
input: | |||
sample=sample_id, | |||
multianno_txt=snp_somatic_annovar.multianno_txt, | |||
docker=maftools_docker, | |||
cluster_config=cluster_config, | |||
disk_size=disk_size | |||
} | |||
call annovar.annovar as snp_loh_annovar { | |||
input: |