@@ -60,7 +60,7 @@ task TNseq { | |||
--tumor_segments ${sample}.contamination.segments \ | |||
${sample}.contamination | |||
sentieon driver -r REFERENCE \ | |||
${SENTIEON_INSTALL_DIR}/bin/sentieon driver -r REFERENCE \ | |||
--algo TNfilter \ | |||
--tumor_sample ${tumor_name} --normal_sample ${normal_name} \ | |||
-v ${sample}.TNseq.TN.tmp.vcf \ |