Update: README.md

README.md

@@ -25,9 +25,10 @@ This APP developed for germline and somatic short variant discovery (SNVs + Inde
 The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs).
 
 ### New Releases
-* The TNhaplotyper, named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2.
+* TNhaplotyper, named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2.
 * The `corealigner` step has been removed.
 * The `vcf2maf` step has been removed. Thus, the final output is the annotated `VCF`.
+* Some parameters' details have been changed, such as the `interval_list` has turned into `interval`.
 
 ### Getting Started
 

tasks/Realigner.wdl

@@ -23,7 +23,7 @@ task Realigner {
     nt=$(nproc)
     
     if [ ${regions} ]; then
-      INTERVAL="--interval_list ${regions}"
+      INTERVAL="--interval ${regions}"
     else
       INTERVAL=""
     fi