Update: README

README.md

@@ -1,7 +1,8 @@
 ### Variant Calling
+
 This APP developed for germline and somatic short variant discovery (SNVs + Indels).
 
-**Accepted Data**
+**Accepted data**
 * TN matched WES for somatic variant calling
 * TN matched WGS for somatic variant calling
 * Normal-only WES for germline variant calling
@@ -9,33 +10,19 @@ This APP developed for germline and somatic short variant discovery (SNVs + Inde
 
 The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs).
 
----
-
-**Supported Callers**
-
-* The fields corresponding to these callers include `haplotyper`, `tnseq`, `tnscope`, `varscan`.
-* All callers are <u>**not activated by default**</u>, which means the default setting is `false`. 
-* You need to manually set the caller to `true` in the submitted sample.csv.
-
-<u>***Germline***</u>
-* Haplotyper
-
-<u>***Somatic***</u>
-* TNseq (TNhaplotyper2)
-* TNscope
-* VarScan
 
----
+**Supported variant callers and annotation tools**
 
-**Annotation Tools**
-* The fields corresponding to two tools include `annovar`, `vep`.
-* All tools are <u>**not activated by default**</u>, which means the default setting is `false`. 
-* You need to manually set the caller to `true` in the submitted sample.csv.
+* Variant calling: 
+* * `haplotyper` (germline)
+* * `tnseq`, `tnscope`, `varscan` (somatic)
+* Annotation: `annovar`, `vep`.
+* The above tools are <u>**not activated by default**</u>, which means the default setting is `false`. You need to manually set the caller to `true` in the submitted sample.csv.
 
 ### New Releases
+* Two annotation tools have been added.
 * TNhaplotyper, named as TNseq in `v0.1.0`, has beed substituted by TNhaplotyper2.
 * The `corealigner` step has been removed.
-* The `vcf2maf` step has been removed. Thus, the final output is the annotated `VCF`.
 * Some parameters' details have been changed, such as the `interval_list` has turned into `interval`.
 
 ### Getting Started