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YaqingLiu 4 年前
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### Variant Calling
This APP developed for germline and somatic short variant discovery (SNVs + Indels).

>**Accepted Data**
**Accepted Data**
* TN matched WES for somatic variant calling
* TN matched WGS for somatic variant calling
* Normal-only WES for germline variant calling
@@ -9,8 +9,9 @@ This APP developed for germline and somatic short variant discovery (SNVs + Inde

The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs).

---

>**Supported Callers**
**Supported Callers**

* The fields corresponding to these callers include `haplotyper`, `tnseq`, `tnscope`, `varscan`.
* All callers are <u>**not activated by default**</u>, which means the default setting is `false`.
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* TNscope
* VarScan

---

>**Annotation Tools**
**Annotation Tools**
* The fields corresponding to two tools include `annovar`, `vep`.
* All tools are <u>**not activated by default**</u>, which means the default setting is `false`.
* You need to manually set the caller to `true` in the submitted sample.csv.

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