1 changed files with 3 additions and 1 deletions
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tasks/bcftools.wdl
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| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf | |||||
| # bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf | |||||
| # Split multiallelic sites | |||||
| bcftools norm -m -both ${vcf} -o ${basename}.norm.vcf | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
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