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fix: bcftools norm

master
YaqingLiu 2 年之前
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f592faa5a9
共有 1 個檔案被更改,包括 3 行新增1 行删除
  1. +3
    -1
      tasks/bcftools.wdl

+ 3
- 1
tasks/bcftools.wdl 查看文件

@@ -13,7 +13,9 @@ task bcftools {
set -e
nt=$(nproc)
bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf
# bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf
# Split multiallelic sites
bcftools norm -m -both ${vcf} -o ${basename}.norm.vcf
>>>
runtime {

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