@@ -13,7 +13,9 @@ task bcftools { | |||
set -e | |||
nt=$(nproc) | |||
bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf | |||
# bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf | |||
# Split multiallelic sites | |||
bcftools norm -m -both ${vcf} -o ${basename}.norm.vcf | |||
>>> | |||
runtime { |