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tasks/bcftools.wdl
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| @@ -13,7 +13,9 @@ task bcftools { | |||
| set -e | |||
| nt=$(nproc) | |||
| bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf | |||
| # bcftools norm -m -both ${vcf} | bcftools norm -f ${ref_dir}/${fasta} -Ov -o ${basename}.norm.vcf | |||
| # Split multiallelic sites | |||
| bcftools norm -m -both ${vcf} -o ${basename}.norm.vcf | |||
| >>> | |||
| runtime { | |||
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