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variant-calling
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113 Commits (1819c0a4f627dbe667893691a2aca7b3cf0bbcf7)
 

Author SHA1 Message Date
  YaqingLiu 1819c0a4f6 Update: threads in Pindel 3 years ago
  YaqingLiu af26391dd8 Fixbug: insert size in Pindel 3 years ago
  YaqingLiu 024d9b4281 update README 3 years ago
  YaqingLiu 3accc366b6 update workflow 3 years ago
  YaqingLiu f4279ccb13 Update: workflow operator 3 years ago
  YaqingLiu d064f8f055 Update: workflow 3 years ago
  YaqingLiu 4975096286 Alter varscan Xmx16g 3 years ago
  YaqingLiu 13bc0462c9 Update: samtools dir 3 years ago
  YaqingLiu 56f48cd21f Update: samtools_docker version 3 years ago
  YaqingLiu 61ae02ea72 Update: samtools_docker version 3 years ago
  YaqingLiu f515625972 Fixbug: samtools index 3 years ago
  YaqingLiu c72f3aae8c Fixbug: replaceRG input 3 years ago
  YaqingLiu 5e46d8aee0 Fixbug: task's name 3 years ago
  YaqingLiu cd5f5ba56b Fixbug: pindel task name 3 years ago
  YaqingLiu 19a6548af2 Fixbug: add pindel Boolean 3 years ago
  YaqingLiu a36b68f093 Fixbug: $ in pindel 3 years ago
  YaqingLiu d2988bab5d Fixbug: cluster: cluster_config 3 years ago
  YaqingLiu 29053d0d19 Alter: replaceRG output 3 years ago
  YaqingLiu 7e4d99c1a7 Add: replaceRG 3 years ago
  YaqingLiu fe311d4483 Fixbug: remove 3 years ago
  YaqingLiu 6899365543 Fixbug: defaults 3 years ago
  YaqingLiu 212b5c40df Fixbug: TNseq output 3 years ago
  YaqingLiu fe6512cce0 Fixbug: TNseq output 3 years ago
  YaqingLiu 71cb524380 Fixbug: TNseq output 3 years ago
  YaqingLiu b124b6d8d0 Fixbug: TNseq 3 years ago
  YaqingLiu dbce0e5ce4 Alter: tumor-only 3 years ago
  YaqingLiu 55e4232daa Fixbug: input_fastq and input_bam 3 years ago
  YaqingLiu 831fa1b007 Alter: varscan_vep input name 3 years ago
  YaqingLiu 9a3ce1ee23 Alter: VEP task name 3 years ago
  YaqingLiu 9e1ac3e469 Alter: BQSR 3 years ago
  YaqingLiu 7868563c2a Fixbug: ANNOVAR 3 years ago
  YaqingLiu 33b1c80f3e test bam input 3 years ago
  YaqingLiu cb2cc7173e test add bam 3 years ago
  YaqingLiu fa7bbf3d1d Update: README 4 years ago
  YaqingLiu 470d220762 Update: README 4 years ago
  YaqingLiu 270b9d1ac0 Update: README 4 years ago
  YaqingLiu 3960b57b2b Update: README 4 years ago
  YaqingLiu 01d17edd41 Update: README 4 years ago
  YaqingLiu 607454ab2f Update: add VEP 4 years ago
  YaqingLiu dbd1da94c2 Update: add PASS filter option 4 years ago
  YaqingLiu 3a2e5030af Update ANNOVAR.wdl filename 4 years ago
  YaqingLiu d925a41571 Update: ANNOVAR 4 years ago
  YaqingLiu fef526105b Add TNseq output 4 years ago
  YaqingLiu 440fc0d224 Add annovar parameter 4 years ago
  YaqingLiu ef82cc2a54 Fixbug: output of annovar 4 years ago
  YaqingLiu a2064698dc Fixbug: output of annovar 4 years ago
  YaqingLiu f3928d598e Update: default interval_padding is 0 4 years ago
  YaqingLiu 6d4d6abe80 Update: simplify BQSR 4 years ago
  YaqingLiu eab87988a1 Alter: Varscan2 input is deduped BAM 4 years ago
  YaqingLiu e8f07a8c53 Alter: TNseq input is deduped BAM 4 years ago