YaqingLiu
/
variant-calling
Tarkkaile 1
Äänestä 0
Fork 1
Koodi Ongelmat 0 Pull-pyynnöt 0 Julkaisut 3 Wiki Activity

Commit Graph

  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • *
  • f4c1c1a (HEAD -> master) Update: sample_id in Haplotyper and Pindel by YaqingLiu 2021-08-10 18:21:32 +0800
  • f02a98c Update: remove # line by YaqingLiu 2021-08-10 11:36:51 +0800
  • cd2666a Update: VEP ncbi_build by YaqingLiu 2021-08-10 11:32:02 +0800
  • 6d75276 Update: VEP ncbi_build by YaqingLiu 2021-08-09 14:58:42 +0800
  • af15b0f Update: VEP by YaqingLiu 2021-08-09 14:50:04 +0800
  • 0b9bcc9 Update: VEP and ANNOVAR by YaqingLiu 2021-08-09 14:18:07 +0800
  • c59e589 Update: java Xmx32g by YaqingLiu 2021-08-07 21:51:33 +0800
  • df1c66f Update: remove only_pass by YaqingLiu 2021-08-07 11:22:15 +0800
  • e8269dd Update: annovar by YaqingLiu 2021-08-07 11:14:57 +0800
  • d7acaa8 Update: replaceRG by YaqingLiu 2021-08-06 04:25:20 +0800
  • aea00bb Update: README by YaqingLiu 2021-08-05 15:37:02 +0800
  • 1819c0a Update: threads in Pindel by YaqingLiu 2021-08-04 08:25:28 +0800
  • af26391 Fixbug: insert size in Pindel by YaqingLiu 2021-08-03 14:40:38 +0800
  • 024d9b4 update README by YaqingLiu 2021-08-02 22:30:43 +0800
  • 3accc36 update workflow by YaqingLiu 2021-08-02 22:16:31 +0800
  • f4279cc Update: workflow operator by YaqingLiu 2021-08-01 12:28:01 +0800
  • d064f8f Update: workflow by YaqingLiu 2021-08-01 12:21:00 +0800
  • 4975096 Alter varscan Xmx16g by YaqingLiu 2021-08-01 11:26:57 +0800
  • 13bc046 Update: samtools dir by YaqingLiu 2021-08-01 10:40:40 +0800
  • 56f48cd Update: samtools_docker version by YaqingLiu 2021-08-01 10:25:02 +0800
  • 61ae02e Update: samtools_docker version by YaqingLiu 2021-08-01 10:10:10 +0800
  • f515625 Fixbug: samtools index by YaqingLiu 2021-08-01 01:15:06 +0800
  • c72f3aa Fixbug: replaceRG input by YaqingLiu 2021-08-01 01:04:09 +0800
  • 5e46d8a Fixbug: task's name by YaqingLiu 2021-07-31 16:59:51 +0000
  • cd5f5ba Fixbug: pindel task name by YaqingLiu 2021-08-01 00:56:52 +0800
  • 19a6548 Fixbug: add pindel Boolean by YaqingLiu 2021-08-01 00:51:17 +0800
  • a36b68f Fixbug: $ in pindel by YaqingLiu 2021-08-01 00:38:51 +0800
  • d2988ba Fixbug: cluster: cluster_config by YaqingLiu 2021-08-01 00:35:00 +0800
  • 29053d0 Alter: replaceRG output by YaqingLiu 2021-08-01 00:24:18 +0800
  • 7e4d99c Add: replaceRG by YaqingLiu 2021-08-01 00:15:43 +0800
  • fe311d4 Fixbug: remove by YaqingLiu 2021-07-31 22:59:18 +0800
  • 6899365 Fixbug: defaults by YaqingLiu 2021-07-31 20:10:56 +0800
  • 212b5c4 Fixbug: TNseq output by YaqingLiu 2021-07-31 20:07:09 +0800
  • fe6512c Fixbug: TNseq output by YaqingLiu 2021-07-31 20:05:23 +0800
  • 71cb524 Fixbug: TNseq output by YaqingLiu 2021-07-31 19:58:08 +0800
  • b124b6d Fixbug: TNseq by YaqingLiu 2021-07-30 16:12:40 +0800
  • dbce0e5 Alter: tumor-only by YaqingLiu 2021-07-30 10:52:58 +0800
  • 55e4232 Fixbug: input_fastq and input_bam by YaqingLiu 2021-07-30 10:19:14 +0800
  • 831fa1b Alter: varscan_vep input name by YaqingLiu 2021-07-30 10:16:38 +0800
  • 9a3ce1e Alter: VEP task name by YaqingLiu 2021-07-30 10:09:37 +0800
  • 9e1ac3e Alter: BQSR by YaqingLiu 2021-07-30 10:02:16 +0800
  • 7868563 Fixbug: ANNOVAR by YaqingLiu 2021-07-30 09:18:17 +0800
  • 33b1c80 test bam input by YaqingLiu 2021-07-30 09:01:02 +0800
  • cb2cc71 test add bam by YaqingLiu 2021-07-29 09:53:11 +0800
  • fa7bbf3 Update: README by YaqingLiu 2021-06-24 12:11:34 +0800
  • 470d220 Update: README by YaqingLiu 2021-06-24 12:07:55 +0800
  • 270b9d1 Update: README by YaqingLiu 2021-06-24 12:07:34 +0800
  • 3960b57 Update: README by YaqingLiu 2021-06-24 11:59:37 +0800
  • 01d17ed Update: README by YaqingLiu 2021-06-24 11:58:51 +0800
  • 607454a Update: add VEP by YaqingLiu 2021-06-24 11:49:51 +0800
  • dbd1da9 Update: add PASS filter option by YaqingLiu 2021-06-24 10:41:19 +0800
  • 3a2e503 Update ANNOVAR.wdl filename by YaqingLiu 2021-06-23 01:36:20 +0000
  • d925a41 Update: ANNOVAR by YaqingLiu 2021-06-22 11:49:40 +0800
  • fef5261 Add TNseq output by YaqingLiu 2021-06-22 09:33:04 +0800
  • 440fc0d Add annovar parameter by YaqingLiu 2021-06-22 01:36:56 +0800
  • ef82cc2 (tag: v0.1.3) Fixbug: output of annovar by YaqingLiu 2021-05-12 09:28:07 +0800
  • a206469 Fixbug: output of annovar by YaqingLiu 2021-05-12 09:26:17 +0800
  • f3928d5 Update: default interval_padding is 0 by YaqingLiu 2021-05-11 21:36:04 +0800
  • 6d4d6ab Update: simplify BQSR by YaqingLiu 2021-05-11 12:14:55 +0800
  • eab8798 Alter: Varscan2 input is deduped BAM by YaqingLiu 2021-05-11 12:13:28 +0800
  • e8f07a8 Alter: TNseq input is deduped BAM by YaqingLiu 2021-05-11 12:07:23 +0800
  • d1faa18 (tag: v0.1.2) Alter: TNseq Input by YaqingLiu 2021-05-11 11:48:39 +0800
  • 03fb6ee Update: defaults by YaqingLiu 2021-05-11 09:22:29 +0800
  • 568b254 Update: defaults by YaqingLiu 2021-05-08 14:08:37 +0800
  • 7e612b6 Fix bug: merge Varscan's results by YaqingLiu 2021-05-08 12:25:18 +0800
  • cb6332a Update: varscan somatic annovar by YaqingLiu 2021-05-08 12:10:16 +0800
  • a06abfc Update: varscan by YaqingLiu 2021-05-08 12:06:15 +0800
  • 96a3c5d Update: annovar.wdl, remove ensGene and knownGene by YaqingLiu 2021-05-08 10:45:58 +0800
  • 09955be Update: default sentieon version by YaqingLiu 2021-05-06 14:18:12 +0800
  • 61c1a99 Update: README.md by YaqingLiu 2021-05-06 10:37:05 +0800
  • 4c099f3 Update: README.md by YaqingLiu 2021-05-06 10:36:32 +0800
  • d132679 update default by YaqingLiu 2021-04-30 16:33:04 +0800
  • 4ce53ad Fix bug: TNscope.wdl by YaqingLiu 2021-04-28 21:12:52 +0800
  • af9561b Fix bug: BQSR.wdl by YaqingLiu 2021-04-28 15:43:31 +0800
  • 59b2e9c Fix bug: Realigner's inputs by YaqingLiu 2021-04-28 15:04:07 +0800
  • ed468bf Fix bug: TNseq.wdl by YaqingLiu 2021-04-28 14:59:39 +0800
  • a605760 Fix bug: BQSR.wdl by YaqingLiu 2021-04-28 13:55:01 +0800
  • fe662a3 Fix bug: TNseq.wdl by YaqingLiu 2021-04-28 13:11:17 +0800
  • e1902ce Update: default interval_padding by YaqingLiu 2021-04-28 12:46:17 +0800
  • 09159a1 Update: README.md by YaqingLiu 2021-04-28 10:00:03 +0800
  • ab4b741 Fix bug: germline by YaqingLiu 2021-04-28 00:31:00 +0800
  • 784f19e Fix bug: remove vcf2maf by YaqingLiu 2021-04-28 00:26:53 +0800
  • 02f7991 Fix bug: remove vcf2maf by YaqingLiu 2021-04-28 00:25:41 +0800
  • 693a6bc Fix bug: Haplotyper by YaqingLiu 2021-04-28 00:24:27 +0800
  • 193d7a3 Update: inputs by YaqingLiu 2021-04-28 00:23:06 +0800
  • 979513f Update: inputs by YaqingLiu 2021-04-28 00:22:01 +0800
  • 1dd6c60 Update: inputs by YaqingLiu 2021-04-28 00:20:03 +0800
  • 340692e Update: inputs by YaqingLiu 2021-04-28 00:15:22 +0800
  • eb14b9b Update: inputs by YaqingLiu 2021-04-28 00:14:10 +0800
  • d73e139 Update: inputs by YaqingLiu 2021-04-28 00:02:49 +0800
  • ccca53b Update: README.md by YaqingLiu 2021-04-27 23:45:55 +0800
  • f067094 Update: README.md by YaqingLiu 2021-04-27 23:41:03 +0800
  • adf1707 Update: README.md by YaqingLiu 2021-04-27 23:40:32 +0800
  • dcadd9b Update: README.md by YaqingLiu 2021-04-27 23:38:34 +0800
  • 4448cb1 Update: README.md by YaqingLiu 2021-04-27 23:38:17 +0800
  • fbcabf9 Update: README.md by YaqingLiu 2021-04-27 23:36:57 +0800
  • 51f1775 Update: README.md by YaqingLiu 2021-04-27 23:36:20 +0800
  • 81822da Update: README.md by YaqingLiu 2021-04-27 23:22:53 +0800
  • 23fb224 Update: README.md by YaqingLiu 2021-04-27 23:16:03 +0800
  • d343c8d Update: README.md by YaqingLiu 2021-04-27 23:15:43 +0800