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@@ -3,18 +3,17 @@ |
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This APP developed for germline and somatic short variant discovery (SNVs + Indels). |
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**Accepted data** |
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* TN matched WES for somatic variant calling |
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* TN matched WGS for somatic variant calling |
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* Normal-only WES for germline variant calling |
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* Normal-only WGS for germline variant calling |
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* TN matched or tumor-only WES/WGS for somatic variant calling |
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* Normal-only WES/WGS for germline variant calling |
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The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). |
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**Supported variant callers and annotation tools** |
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* Variant calling: `haplotyper` (germline); `tnseq`, `tnscope`, `varscan` (somatic). |
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* Variant calling: `haplotyper`, `pindel` (germline); `tnseq`, `tnscope`, `varscan` (somatic; `varscan` don't support the variant calling of tumor-only data). |
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* Annotation: `annovar`, `vep`. |
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* The above tools are <u>**not activated by default**</u>, which means the default setting is `false`. You need to manually set the caller to `true` in the submitted sample.csv. |
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### New Releases |