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tasks/TNseq.wdl
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| @@ -81,6 +81,8 @@ task TNseq { | |||
| output { | |||
| File TNseq_vcf = "${sample}.TNseq.TN.vcf" | |||
| File TNseq_vcf_index = "${sample}.TNseq.TN.vcf.idx" | |||
| File TNseq_tmp_vcf = "${sample}.TNseq.TN.tmp.vcf" | |||
| File TNseq_tmp_vcf_index = "${sample}.TNseq.TN.tmp.vcf.idx" | |||
| File contamination = "${sample}.contamination" | |||
| File contamination_segments = "${sample}.contamination.segments" | |||
| File orientation = "${sample}.orientation" | |||
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