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@@ -1,7 +1,7 @@ |
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### Variant Calling |
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This APP developed for germline and somatic short variant discovery (SNVs + Indels). |
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>**Accepted Data** |
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**Accepted Data** |
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* TN matched WES for somatic variant calling |
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* TN matched WGS for somatic variant calling |
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* Normal-only WES for germline variant calling |
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@@ -9,8 +9,9 @@ This APP developed for germline and somatic short variant discovery (SNVs + Inde |
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The datatype is judged by whether the bed file is set (i.e. the `regions` in inputs). |
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--- |
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>**Supported Callers** |
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**Supported Callers** |
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* The fields corresponding to these callers include `haplotyper`, `tnseq`, `tnscope`, `varscan`. |
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* All callers are <u>**not activated by default**</u>, which means the default setting is `false`. |
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@@ -24,8 +25,9 @@ The datatype is judged by whether the bed file is set (i.e. the `regions` in inp |
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* TNscope |
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* VarScan |
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--- |
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>**Annotation Tools** |
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**Annotation Tools** |
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* The fields corresponding to two tools include `annovar`, `vep`. |
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* All tools are <u>**not activated by default**</u>, which means the default setting is `false`. |
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* You need to manually set the caller to `true` in the submitted sample.csv. |