@@ -10,7 +10,7 @@ task qualimapBAMqc { | |||
set -e | |||
nt=$(nproc) | |||
/opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=32G | |||
tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc | |||
tar -zcvf ${bamname}_bamqc_qualimap.tar.gz ${bamname}_bamqc | |||
>>> | |||
@@ -22,7 +22,7 @@ task qualimapBAMqc { | |||
} | |||
output { | |||
File bamqc_zip = "${bamname}_bamqc_qualimap.zip" | |||
File bamqc_zip = "${bamname}_bamqc_qualimap.tar.gz" | |||
} | |||
} |