1 zmienionych plików z 2 dodań i 2 usunięć
+ 2
- 2
tasks/qualimapBAMqc.wdl
Wyświetl plik
| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=32G | /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=32G | ||||
| tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc | |||||
| tar -zcvf ${bamname}_bamqc_qualimap.tar.gz ${bamname}_bamqc | |||||
| >>> | >>> | ||||
| } | } | ||||
| output { | output { | ||||
| File bamqc_zip = "${bamname}_bamqc_qualimap.zip" | |||||
| File bamqc_zip = "${bamname}_bamqc_qualimap.tar.gz" | |||||
| } | } | ||||
| } | } |
Ładowanie…