1 changed files with 2 additions and 2 deletions
+ 2
- 2
tasks/qualimapBAMqc.wdl
View File
| @@ -10,7 +10,7 @@ task qualimapBAMqc { | |||
| set -e | |||
| nt=$(nproc) | |||
| /opt/qualimap/qualimap bamqc -bam ${bam} -outformat PDF:HTML -nt $nt -outdir ${bamname}_bamqc --java-mem-size=32G | |||
| tar -zcvf ${bamname}_bamqc_qualimap.zip ${bamname}_bamqc | |||
| tar -zcvf ${bamname}_bamqc_qualimap.tar.gz ${bamname}_bamqc | |||
| >>> | |||
| @@ -22,7 +22,7 @@ task qualimapBAMqc { | |||
| } | |||
| output { | |||
| File bamqc_zip = "${bamname}_bamqc_qualimap.zip" | |||
| File bamqc_zip = "${bamname}_bamqc_qualimap.tar.gz" | |||
| } | |||
| } | |||
Loading…