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tasks/VEP.wdl
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| @@ -22,6 +22,8 @@ task VEP { | |||
| set -e | |||
| nt=$(nproc) | |||
| source /etc/profile | |||
| awk -F'\t' '{if(($1~"^#")||($1!~"^#" && $7=="PASS")){print $0}}' ${vcf} > ${sample_id}.vcf | |||
| # Judge the SAMPLE info of vcf file | |||
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