Generate the Panel of Normal files for TNseq and TNscope.
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
YaqingLiu fa91f6bae4 add realigner and bqsr 4 年之前
tasks add realigner and bqsr 4 年之前
.DS_Store Alter: test 4 年之前
README.md Add: mergePoN 4 年之前
defaults Alter: add bcftools_docker 4 年之前
inputs Alter: add bcftools_docker 4 年之前
workflow.wdl add realigner and bqsr 4 年之前

README.md

README.md

Author: Yaqing Liu

Email: yaqing.liu@outlook.com

Last Updates: 07/04/2021

Requirements

  • choppy
  • Ali-Cloud
  • Linux

Panel of Normals

The Panel of Normals approach uses a set of matched normal samples to determine the baseline level from which to call CNV events. These matched normal samples should be derived from the same library prep and sequencing workflow that was used for the case sample. This allows the algorithm to subtract out system level biases that are not sample specific.

Usage

```