Alter: test

tasks/PON.wdl

@@ -26,13 +26,13 @@ task PoN {
 		cp ${cosmic_dir}/${cosmic_vcf} /cromwell_root/tmp/cosmic/
 		${SENTIEON_INSTALL_DIR}/bin/sentieon util vcfindex /cromwell_root/tmp/cosmic/${cosmic_vcf}
 
-		# Generating TNhaplotyper PON
+		# Generating TNhaplotyper PoN
 		${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt --interval ${regions} -r ${ref_dir}/${fasta} -i ${normal_bam} --algo TNhaplotyper --detect_pon --cosmic /cromwell_root/tmp/cosmic/${cosmic_vcf} --dbsnp ${dbsnp_dir}/${dbsnp} ${sample}_TNhaplotyper_pon.vcf
 
-		# Generating TNhaplotyper2 PON
+		# Generating TNhaplotyper2 PoN
 		${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt --interval ${regions} -r ${ref_dir}/${fasta} -i ${normal_bam} --algo TNhaplotyper2 --normal_sample ${sample} ${sample}_TNhaplotyper2_pon.vcf
 
-		# Generating TNscope PON
+		# Generating TNscope PoN
 		${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt --interval ${regions} -r ${ref_dir}/${fasta} -i ${normal_bam} --algo TNscope --normal_sample ${sample} ${sample}_TNscope_pon.vcf
 	>>>