YaqingLiu
/
PoN
Segui 1
Vota 0
Forka 0
Codice Problemi 0 Pull Requests 0 Rilasci 0 Wiki Attività
Generate the Panel of Normal files for TNseq and TNscope.
You can not select more than 25 topics Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
19 Commit
1 Ramo (Branch)
Albero (Tree): fa91f6bae4
Rami (Branch) Tag
${ item.name }
Crea branch ${ searchTerm }
da 'fa91f6bae4'
${ noResults }
YaqingLiu fa91f6bae4 add realigner and bqsr 4 anni fa
tasks add realigner and bqsr 4 anni fa
.DS_Store Alter: test 4 anni fa
README.md Add: mergePoN 4 anni fa
defaults Alter: add bcftools_docker 4 anni fa
inputs Alter: add bcftools_docker 4 anni fa
workflow.wdl add realigner and bqsr 4 anni fa

README.md

README.md

Author: Yaqing Liu

Email: yaqing.liu@outlook.com

Last Updates: 07/04/2021

Requirements

  • choppy
  • Ali-Cloud
  • Linux

Panel of Normals

The Panel of Normals approach uses a set of matched normal samples to determine the baseline level from which to call CNV events. These matched normal samples should be derived from the same library prep and sequencing workflow that was used for the case sample. This allows the algorithm to subtract out system level biases that are not sample specific.

Usage

```