YaqingLiu
/
PoN
Observar 1
Favorito 0
Fork 0
Código Issues 0 Pull requests 0 Versões 0 Wiki Atividade
Generate the Panel of Normal files for TNseq and TNscope.
Você não pode selecionar mais de 25 tópicos Os tópicos devem começar com uma letra ou um número, podem incluir traços ('-') e podem ter até 35 caracteres.
26 Commits
1 Branch
Tag: 3196be9d29
Branches Tags
${ item.name }
Criar branch ${ searchTerm }
de 3196be9d29
${ noResults }
YaqingLiu 3196be9d29 Fix bug: basename 4 anos atrás
tasks Fix bug: basename 4 anos atrás
.DS_Store Alter: test 4 anos atrás
README.md Add: mergePoN 4 anos atrás
defaults update input 4 anos atrás
inputs Fix bug: sample_id 4 anos atrás
workflow.wdl Fix bug: tumor sample SM tag is not present in the bam file 4 anos atrás

README.md

README.md

Author: Yaqing Liu

Email: yaqing.liu@outlook.com

Last Updates: 07/04/2021

Requirements

  • choppy
  • Ali-Cloud
  • Linux

Panel of Normals

The Panel of Normals approach uses a set of matched normal samples to determine the baseline level from which to call CNV events. These matched normal samples should be derived from the same library prep and sequencing workflow that was used for the case sample. This allows the algorithm to subtract out system level biases that are not sample specific.

Usage

```