2 changed files with 2 additions and 2 deletions
+ 1
- 1
tasks/BQSR.wdl
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| @@ -6,7 +6,7 @@ task BQSR { | |||
| File dbmills_dir | |||
| String db_mills | |||
| String sample=basename(normal_bam, ".*") | |||
| String sample=basename(realigned_bam, ".*") | |||
| String SENTIEON_INSTALL_DIR | |||
| String SENTIEON_LICENSE | |||
| String fasta | |||
+ 1
- 1
tasks/Realigner.wdl
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| @@ -7,7 +7,7 @@ task Realigner { | |||
| String SENTIEON_INSTALL_DIR | |||
| String SENTIEON_LICENSE | |||
| String sample=basename(normal_bam, ".*") | |||
| String sample=basename(deduped_bam, ".*") | |||
| File deduped_bam | |||
| File deduped_bam_index | |||
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