Fix bug: sample_id

inputs

@@ -1,5 +1,5 @@
 {
-  "{{ project_name }}.panel_id": "{{ panel_id }}",
+  "{{ project_name }}.sample_id": "{{ sample_id }}",
   "{{ project_name }}.deduped_bam": "{{ deduped_bam }}",
   "{{ project_name }}.deduped_bam_index": "{{ deduped_bam_index }}",
   "{{ project_name }}.fasta": "{{ fasta }}",

tasks/PoN.wdl

@@ -8,7 +8,7 @@ task PoN {
 
   File normal_bam
   File normal_bam_index
-  String sample=basename(normal_bam, ".*")
+  String sample
   String docker
   String cluster_config
   String disk_size

workflow.wdl

@@ -5,7 +5,7 @@ import "./tasks/PoN.wdl" as PoN
 workflow {{ project_name }} {
   String SENTIEON_INSTALL_DIR
   String SENTIEON_LICENSE
-  String panel_id
+  String sample_id
 
   File deduped_bam
   File deduped_bam_index
@@ -32,7 +32,7 @@ workflow {{ project_name }} {
     deduped_bam_index=deduped_bam_index,
     db_mills=db_mills,
     dbmills_dir=dbmills_dir,
-    sample=sample_id + '_tumor',
+    sample=sample_id,
     docker=sentieon_docker,
     disk_size=disk_size,
     cluster_config=cluster_config
@@ -50,7 +50,7 @@ workflow {{ project_name }} {
     dbmills_dir=dbmills_dir,
     dbsnp=dbsnp,
     dbsnp_dir=dbsnp_dir,
-    sample=sample_id + '_tumor',
+    sample=sample_id,
     docker=sentieon_docker,
     disk_size=disk_size,
     cluster_config=cluster_config
@@ -65,6 +65,7 @@ workflow {{ project_name }} {
     regions=regions,
     normal_bam=BQSR.recaled_bam,
     normal_bam_index=BQSR.recaled_bam_index,
+    sample=sample_id,
     docker=sentieon_docker,
     disk_size=disk_size,
     cluster_config=cluster_config