1 changed files with 2 additions and 2 deletions
+ 2
- 2
tasks/samtools.wdl
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| @@ -11,8 +11,8 @@ task samtools { | |||
| nt=$(nproc) | |||
| mkdir -p /cromwell_root/tmp/samtools | |||
| cd /cromwell_root/tmp/samtools | |||
| /opt/conda/bin/samtools -@ $nt index ${sep=' ' tumor_bam} | |||
| /opt/conda/bin/samtools -@ $nt index ${sep=' ' normal_bam} | |||
| /opt/conda/bin/samtools index ${sep=' ' tumor_bam} | |||
| /opt/conda/bin/samtools index ${sep=' ' normal_bam} | |||
| >>> | |||
| runtime { | |||
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