Haonan917
2 years ago
2 changed files with 499 additions and 499 deletions
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- 1
tasks/Haplotyper.wdl
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| @@ -18,7 +18,7 @@ command <<< | |||
| --output_vcf=${sample}_hc.vcf \ | |||
| --num_shards=$(nproc) | |||
| gatk IndexFeatureFile -I ${sample}_hc.vcf -O ${sample}_hc.vcf.idx | |||
| /opt/gatk-4.4/gatk IndexFeatureFile -I ${sample}_hc.vcf -O ${sample}_hc.vcf.idx | |||
| >>> | |||
| runtime { | |||
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- 498
workflow.wdl
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