--output_vcf=${sample}_hc.vcf \ | --output_vcf=${sample}_hc.vcf \ | ||||
--num_shards=$(nproc) | --num_shards=$(nproc) | ||||
gatk IndexFeatureFile -I ${sample}_hc.vcf -O ${sample}_hc.vcf.idx | |||||
/opt/gatk-4.4/gatk IndexFeatureFile -I ${sample}_hc.vcf -O ${sample}_hc.vcf.idx | |||||
>>> | >>> | ||||
runtime { | runtime { |