Usage

$ open-choppy-env $ choppy install YaqingLiu/bcftools

Input File

Input file should be in the form of json. For example:

{
	"vcf": [
          "oss://choppy-cromwell-result/test-choppy/..._pon.vcf",
          "oss://choppy-cromwell-result/test-choppy/..._pon.vcf",
          "oss://choppy-cromwell-result/test-choppy/..._pon.vcf"
        ],
	"sample_id": "somatic_normal"
}