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tasks/TNscope.wdl
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| @@ -54,6 +54,7 @@ task TNscope { | |||
| --algo TNscope \ | |||
| $SAMPLE \ | |||
| --dbsnp ${dbsnp_dir}/${dbsnp} \ | |||
| --min_base_qual 20 \ | |||
| ${sample}.TNscope.vcf | |||
| # awk -F'\t' '{if(($1~"^#")||($1!~"^#" && $7=="PASS")){print $0}}' ${sample}.TNscope.vcf > ${sample}.TNscope.PASS.vcf | |||
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