docs: README.md

README.md

@@ -1,3 +1,14 @@
-# poi-upstream
+# WES analysis
 
-Automated integrated analysis software for genomics data of the cancer patients.
+Automated integrated analysis software for genomics data of the cancer patients.
+
+## Quality control
+FastQC, FastQ Screen, Qualimap
+
+## Variant calling
+- SNV/Indel: TNseq (somatic), Haplotyper (germline)
+- CNV: CNVkit
+- SV: Manta
+- TMB: in-house code
+- HRD: sequenza
+- MSI: MSIsensor