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| # poi-upstream | |||
| # WES analysis | |||
| Automated integrated analysis software for genomics data of the cancer patients. | |||
| Automated integrated analysis software for genomics data of the cancer patients. | |||
| ## Quality control | |||
| FastQC, FastQ Screen, Qualimap | |||
| ## Variant calling | |||
| - SNV/Indel: TNseq (somatic), Haplotyper (germline) | |||
| - CNV: CNVkit | |||
| - SV: Manta | |||
| - TMB: in-house code | |||
| - HRD: sequenza | |||
| - MSI: MSIsensor | |||
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