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tasks/MSIsensor.wdl
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| task MSIsensor { | task MSIsensor { | ||||
| String sample | |||||
| File ref_dir | File ref_dir | ||||
| String fasta | String fasta | ||||
| File tumor_bam | File tumor_bam |
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workflow.wdl
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| call MSIsensor.MSIsensor as MSIsensor { | call MSIsensor.MSIsensor as MSIsensor { | ||||
| input: | input: | ||||
| sample=sample_id, | |||||
| fasta=fasta, | fasta=fasta, | ||||
| ref_dir=ref_dir, | ref_dir=ref_dir, | ||||
| normal_bam=normal_BQSR.recaled_bam, | normal_bam=normal_BQSR.recaled_bam, |
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