@@ -1,5 +1,6 @@ | |||
task MSIsensor { | |||
String sample | |||
File ref_dir | |||
String fasta | |||
File tumor_bam |
@@ -294,6 +294,7 @@ workflow {{ project_name }} { | |||
call MSIsensor.MSIsensor as MSIsensor { | |||
input: | |||
sample=sample_id, | |||
fasta=fasta, | |||
ref_dir=ref_dir, | |||
normal_bam=normal_BQSR.recaled_bam, |