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tasks/ANNOVAR.wdl
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| ${annovar_database} -buildver hg19 \ | ${annovar_database} -buildver hg19 \ | ||||
| -out ${basename} -remove \ | -out ${basename} -remove \ | ||||
| -protocol refGene,cytoBand,genomicSuperDups,clinvar_20220320,intervar_20180118,cosmic95_coding,cosmic95_noncoding,avsnp150 \ | -protocol refGene,cytoBand,genomicSuperDups,clinvar_20220320,intervar_20180118,cosmic95_coding,cosmic95_noncoding,avsnp150 \ | ||||
| -operation g,r,r,f,f,f,f,f,f,f \ | |||||
| -operation g,r,r,f,f,f,f,f \ | |||||
| -nastring . -vcfinput -polish -thread $nt | -nastring . -vcfinput -polish -thread $nt | ||||
| # gnomad211_exome,dbnsfp42c, | # gnomad211_exome,dbnsfp42c, | ||||
| >>> | >>> |
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