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Generate the Panel of Normal files for TNseq and TNscope.
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YaqingLiu bd4c35ef9e Fix bug: inputs pirms 4 gadiem
tasks Fix bug: tumor_sample parameter pirms 4 gadiem
.DS_Store Alter: test pirms 4 gadiem
README.md Add: mergePoN pirms 4 gadiem
defaults update input pirms 4 gadiem
inputs Fix bug: inputs pirms 4 gadiem
workflow.wdl Fix bug: tumor sample SM tag is not present in the bam file pirms 4 gadiem

README.md

README.md

Author: Yaqing Liu

Email: yaqing.liu@outlook.com

Last Updates: 07/04/2021

Requirements

  • choppy
  • Ali-Cloud
  • Linux

Panel of Normals

The Panel of Normals approach uses a set of matched normal samples to determine the baseline level from which to call CNV events. These matched normal samples should be derived from the same library prep and sequencing workflow that was used for the case sample. This allows the algorithm to subtract out system level biases that are not sample specific.

Usage

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