Fix bug: tumor_sample parameter

inputs

@@ -14,4 +14,8 @@
   "{{ project_name }}.regions": "{{ regions }}",
   "{{ project_name }}.disk_size": "{{ disk_size }}",
   "{{ project_name }}.cluster_config": "{{ cluster_config }}"
-}
+}
+
+
+sample_id,recaled_bam,recaled_bam_index
+CBCGA269277,oss://choppy-cromwell-result/test-choppy/PoN_test/0cb8780d-42f4-45d7-b36c-a8aaf6767eb2/call-BQSR/CBCGA269277_normal.sorted.deduped.realigned.recaled.bam,oss://choppy-cromwell-result/test-choppy/PoN_test/0cb8780d-42f4-45d7-b36c-a8aaf6767eb2/call-BQSR/CBCGA269277_normal.sorted.deduped.realigned.recaled.bam.bai

tasks/PoN.wdl

@@ -27,10 +27,10 @@ task PoN {
     fi
 
     ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt $INTERVAL -r ${ref_dir}/${fasta} -i ${normal_bam} \
-    --algo TNhaplotyper2 --normal_sample ${sample} ${sample}.TNseq.PoN.vcf
+    --algo TNhaplotyper2 --tumor_sample ${sample} ${sample}.TNseq.PoN.vcf
 
     ${SENTIEON_INSTALL_DIR}/bin/sentieon driver -t $nt $INTERVAL -r ${ref_dir}/${fasta} -i ${normal_bam} \
-    --algo TNscope --normal_sample ${sample} ${sample}.TNscope.PoN.vcf
+    --algo TNscope --tumor_sample ${sample} ${sample}.TNscope.PoN.vcf
   >>>
   
   runtime {