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Fix bug: basename

master
YaqingLiu 4 年前
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53009bc220
共有 3 个文件被更改,包括 3 次插入3 次删除
  1. +1
    -1
      tasks/BQSR.wdl
  2. +1
    -1
      tasks/PoN.wdl
  3. +1
    -1
      tasks/Realigner.wdl

+ 1
- 1
tasks/BQSR.wdl 查看文件

String cluster_config String cluster_config
String disk_size String disk_size
String sample=basename(realigned_bam, ".*")
String sample=basename(realigned_bam, ".sorted.deduped.realigned.bam")
command <<< command <<<
set -o pipefail set -o pipefail

+ 1
- 1
tasks/PoN.wdl 查看文件

String cluster_config String cluster_config
String disk_size String disk_size


String sample=basename(normal_bam, ".*")
String sample=basename(normal_bam, ".sorted.deduped.realigned.recaled.bam")
command <<< command <<<
set -o pipefail set -o pipefail

+ 1
- 1
tasks/Realigner.wdl 查看文件

String cluster_config String cluster_config
String disk_size String disk_size
String sample=basename(deduped_bam, ".*")
String sample=basename(deduped_bam, ".sorted.deduped.bam")
command <<< command <<<
set -o pipefail set -o pipefail

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