3 gewijzigde bestanden met toevoegingen van 3 en 3 verwijderingen
+ 1
- 1
tasks/BQSR.wdl
Bestand weergeven
| @@ -16,7 +16,7 @@ task BQSR { | |||
| String cluster_config | |||
| String disk_size | |||
| String sample=basename(realigned_bam, ".*") | |||
| String sample=basename(realigned_bam, ".sorted.deduped.realigned.bam") | |||
| command <<< | |||
| set -o pipefail | |||
+ 1
- 1
tasks/PoN.wdl
Bestand weergeven
| @@ -12,7 +12,7 @@ task PoN { | |||
| String cluster_config | |||
| String disk_size | |||
| String sample=basename(normal_bam, ".*") | |||
| String sample=basename(normal_bam, ".sorted.deduped.realigned.recaled.bam") | |||
| command <<< | |||
| set -o pipefail | |||
+ 1
- 1
tasks/Realigner.wdl
Bestand weergeven
| @@ -14,7 +14,7 @@ task Realigner { | |||
| String cluster_config | |||
| String disk_size | |||
| String sample=basename(deduped_bam, ".*") | |||
| String sample=basename(deduped_bam, ".sorted.deduped.bam") | |||
| command <<< | |||
| set -o pipefail | |||
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