Fix bug: basename

tasks/BQSR.wdl

@@ -16,7 +16,7 @@ task BQSR {
   String cluster_config
   String disk_size
 
-  String sample=basename(realigned_bam, ".*")
+  String sample=basename(realigned_bam, ".sorted.deduped.realigned.bam")
 
   command <<<
     set -o pipefail

tasks/PoN.wdl

@@ -12,7 +12,7 @@ task PoN {
   String cluster_config
   String disk_size
 
-  String sample=basename(normal_bam, ".*")
+  String sample=basename(normal_bam, ".sorted.deduped.realigned.recaled.bam")
   
   command <<<
     set -o pipefail

tasks/Realigner.wdl

@@ -14,7 +14,7 @@ task Realigner {
   String cluster_config
   String disk_size
 
-  String sample=basename(deduped_bam, ".*")
+  String sample=basename(deduped_bam, ".sorted.deduped.bam")
   
   command <<<
     set -o pipefail