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tasks/export.wdl
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| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| #mkdir -p /cromwell_root/tmp/cnvkit | |||||
| # mkdir -p /cromwell_root/tmp/cnvkit | |||||
| cp -r ${sep=" " results} . | cp -r ${sep=" " results} . | ||||
| #cd /cromwell_root/tmp/cnvkit | |||||
| # cd /cromwell_root/tmp/cnvkit | |||||
| # this version app just provides seg | # this version app just provides seg | ||||
| cnvkit.py export seg *.cns -o ${sample_id}.seg | cnvkit.py export seg *.cns -o ${sample_id}.seg | ||||
| >>> | >>> |
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