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alter format

master
YaqingLiu 4 anni fa
parent
commit
2310d00d56
1 ha cambiato i file con 9 aggiunte e 9 eliminazioni
  1. +9
    -9
      tasks/export.wdl

+ 9
- 9
tasks/export.wdl Vedi File

@@ -6,18 +6,18 @@ task export{
String disk_size

command <<<
#mkdir -p /cromwell_root/tmp/cnvkit
cp -r ${sep=" " results} .
#cd /cromwell_root/tmp/cnvkit
# this version app just provides seg
cnvkit.py export seg *.cns -o ${sample_id}.seg
#mkdir -p /cromwell_root/tmp/cnvkit
cp -r ${sep=" " results} .
#cd /cromwell_root/tmp/cnvkit
# this version app just provides seg
cnvkit.py export seg *.cns -o ${sample_id}.seg
>>>
runtime {
docker: docker
cluster: cluster_config
systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
docker: docker
cluster: cluster_config
systemDisk: "cloud_ssd 40"
dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
}

output {

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