@@ -6,9 +6,9 @@ task export{ | |||
String disk_size | |||
command <<< | |||
#mkdir -p /cromwell_root/tmp/cnvkit | |||
# mkdir -p /cromwell_root/tmp/cnvkit | |||
cp -r ${sep=" " results} . | |||
#cd /cromwell_root/tmp/cnvkit | |||
# cd /cromwell_root/tmp/cnvkit | |||
# this version app just provides seg | |||
cnvkit.py export seg *.cns -o ${sample_id}.seg | |||
>>> |